Zoological Research Museum Alexander Koenig

is a member of Leibniz Association

Link to Leibniz Association

Utilities

All tools listed below require the Perl Package
 
Alicut
 
Uses the Aliscore output and removes ambiguously aligned positions from sequence alignments. Paired positions can be considered if a dot-bracket structure is provided as the first string in the alignment.
 
Countbrackets
 
Converts a dot-bracket structure string into a list of paired and unpaired positions. This is useful to provide secondary structure information for MrBayes. Input is a plain textfile, which must only contain the dot-bracket structure string.
Usage: countbrackets.pl FILE
 

 
 
 

Contact person

+49 228 9122-404
+49 228 9122-212
patrick_kueck [at] web [dot] de

Perl Package

   

Alicut

latest version