Graduiertenschule (GBR)

[27] [28]

Reiter

Info

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Alumni & Alumnae

Ehemalige Studenteninnen / Studenten

[29]

Jan-Philip Oeyen [29]

Tel: +49 228 9122-351

Fax: +49 228 9122-212

E-Mail: Janphilipoeyen [at] gmail.com

[30]

Malte Petersen [30]

ehemaliger Doktorand der Graduiertenschule (GBR)

Fax: +49 228 9122-295

E-Mail: mptrsen [at] uni-bonn.de

[31]

Jeanne Wilbrandt [31]

ehemalige Doktorandin der Graduiertenschule (GBR)

E-Mail: jeanne.wilbrandt [at] leibniz-fli.de

Projekte

2018

[32]

Evolution der polyneopteren Insekten [32]

Polyneoptera ist eine der vier Großgruppen der geflügelten Insekten und besteht aus elf traditionellen Ordnungen wie den Heuschrecken (Orthoptera), den Ohrkneifern (Dermaptera) oder den Schaben (Blattodea). Die Verwandtschaftsverhältnisse zwischen diesen Teilgruppen und damit auch wichtige evolutive Erergnisse wie zum Beispiel der Ursprung von Sozialverhalten, Habitatpräferenzen oder morphologische Anpassungen sind vollkommen ungeklärt. In dem hier vorgestellten Projekt wird durch eine Kombination von phylogenomischen Analysen und detailierten phenotypischen Daten das erste umfassende Bild der Evolution der polyneopteren Insekten entworfen.

Projektleitung:

Dr. Benjamin Wipfler [33]

Finanzierung:

Deutsche Forschungsgemeinschaft

2013

[34]

Gene repertoire Characterization [34]

Comparative genomics is in its infancy. Genome sequencing just now generates the data to compare not only model organisms and vertebrates but to actually assess biodiversity. Explaining biodiversity relies on an understanding of underlying mechanisms of genome evolution, which in turn is based on a thorough knowledge of genomic characters and the driving forces shaping them.

Projektleitung:

Prof. Dr. Bernhard Misof [35]

Finanzierung:

Deutsche Forschungsgemeinschaft

2011

[36]

Trachysphaera UK [36]

Britische Zwergkugler der Gattung Trachysphaera

Projektleitung:

Dr. Thomas Wesener [37]

Finanzierung:

Zoologisches Forschungsmuseum Alexander Koenig

Publikationen

Publiziert in

2021

Bayless, K.M., Trautwein, M.D., Meusemann, K., Petersen, M., Shin, S., Donath, A., Podsiadlowski, L., Mayer, C., Niehuis, O., Peters, R., Meier, R., Kutty, S.N., Liu,S., Zhou, X., Misof, B., Yeates, D.K., Wiegmann, B.M. (2021). Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics. BMC Biology, accepted

[weiterlesen] [39]

Oeyen, J. O., Podsiadlowski, L., Wesener, T. (2021): First recent record of the centipede Strigamia maritima (Leach, 1817) from Germany (Myriapoda, Chilopoda, Geophilomorpha). - Bulletin of the British Myriapod & Isopod Group 33: 88-90.

[weiterlesen] [40]

Links:

Link [41]

Pauli, T. Meusemann, K., Kukowka, S., Sann, M., Donath, A., Mayer C., Oeyen, J.P., ..., Podsiadlowski, L., ..., Misof, B., Peters, R.S., et al. (2021). Analysis of RNA-Seq, DNA Target Enrichment, and Sanger Nucleotide Sequence Data Resolves Deep Splits in the Phylogeny of Cuckoo Wasps (Hymenoptera: Chrysididae), Insect Systematics and Diversity, 5: 1

[weiterlesen] [42]

Links:

https://academic.oup.com/isd/article/5/1/1/6061886 [43]

2020

Skinner, R.K., Dietrich, C.H., Walden, K.O., Sweet, A., Podsiadlowski, L., Petersen, M., Simon, C.. Takiya, D.M., Johnson, K.P. (2020). Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes. Systematic Entomology 45: 85-113

[weiterlesen] [44]

2019

Vizán-Rico, H.I., Mayer, C., Petersen, M., McKenna, D.D., Zhou, X., Gómez-Zurita, J., 2019. Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles. Genes 10, 776.

[weiterlesen] [45]

Wipfler B, Letsch H, Frandsen PB, Kapli P, Mayer C, Bartel D, Buckley TR, Donath A, Edgerly-Rooks JS, Fujita M, Liu S, Machida R, Mashimo Y, Misof B, Niehuis O, Peters RS, Petersen M, Podsiadlowski L, Schütte K, Shimizu S, Uchifune T, Wilbrandt J, Yan E, Zhou X, Simon S (2019) Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects. Proceedings of the national Academy of Sciences 116: 3024-3029

[weiterlesen] [46]

2018

Wilbrandt J, Misof B, Panfilio KA, and Niehuis O: How suitable are automatically inferred gene models for uncovering taxon-specific gene structural differences in gene repertoires? Genome Biology: subm.

[weiterlesen] [47]

Gillung, J.P., Winterton, S.L., Bayless, K.M., Khouri, Z., Borowiec, M.L., Yeates, D., Kimsey, L.S., Misof, B., Shin, S., Zhou, X., Mayer, C., Petersen, M., Wiegmann, B.M., 2018. Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids. Molecular Phylogenetics and Evolution 128, 233–245.

[weiterlesen] [48]

Johnson, K.P., Dietrich, C.H., Friedrich, F., Beutel, R.G., Wipfler, B., Peters, R.S., Allen, J.M., Petersen, M., Donath, A., Walden, K.K.O., Kozlov, A.M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R.M., Cameron, S.L., Weirauch, C., Swanson, D.R., Percy, D.M., Hardy, N.B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H.M., Yoshizawa, K., (2018): Phylogenomics and the evolution of hemipteroid insects. Proceedings of the National Academy of Sciences: 201815820.

[weiterlesen] [49]

2017

Wilbrandt J, Misof B, and Niehuis O: COGNATE: comparative gene annotation characterizer. BMC Genomics 18(1): 535

[weiterlesen] [50]

Links:

Link-PDF [51]

Petersen, M., Meusemann, K., Donath, A., Dowling, D., Liu, S., Peters, R.S., Podsiadlowski, L., Vasilikopoulos, A., Zhou, X., Misof, B., Niehuis, O. (2017): Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes. BMC Bioinformatics. 18(1), 111. https://doi.org/10.1186/s12859-017-1529-8

[weiterlesen] [52]

Bank, S., Sann, M., Mayer, C., Meusemann, K., Donath, A., Podsiadlowski, L., Kozlov, A., Petersen, M., Krogmann, L., Meier, R., Rosa, P., Schmitt, T., Wurdack, M., Liu, S., Zhou, X., Misof, B., Peters, R.S., Niehuis, O., (2017): Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae). Molecular Phylogenetics and Evolution 116, 213–226. https://doi.org/10.1016/j.ympev.2017.08.020

[weiterlesen] [53]

Dowling, D., Pauli, T., Donath, A., Meusemann, K., Podsiadlowski, L., Petersen, M., Peters, R.S., Mayer, C., Liu, S., Zhou, X., Misof, B., Niehuis, O. (2017): Phylogenetic Origin and Diversification of RNAi Pathway Genes in Insects. Genome Biology and Evolution 8(12), 3784-3793. doi:10.1093/gbe/evw281

[weiterlesen] [54]

Peters, R.S., Krogmann, L., Mayer, C., Donath, A., Gunkel, S., Meusemann, K., Kozlov, A., Podsiadlowski, L., Petersen, M., Lanfear, R., Diez, P.A., Heraty, J., Kjer, K.M., Klopfstein, S., Meier, R., Polidori, C., Schmitt, T., Liu, S., Zhou, X., Wappler, T., Rust, J., Misof, B., Niehuis, O. (2017): Evolutionary History of the Hymenoptera. Current Biology. 27, 1013–1018. https://doi.org/10.1016/j.cub.2017.01.027

[weiterlesen] [55]

2016

Kraaijeveld K, Anvar Y, Frank J, Schmitz A, Bast J, Wilbrandt J, Petersen M, Ziesmann T, Niehuis O, Knijff P de, Dunnen JT den, Ellers J: Decay of sexual trait genes in an asexual parasitoid wasp. Genome Biol Evol: evw273

[weiterlesen] [56]

Links:

Link-PDF [57]

Pauli, T., Vedder, L., Dowling, D., Petersen, M., Meusemann, K., Donath, A., Peters, R.S., Podsiadlowski, L., Mayer, C., Liu, S., Zhou, X., Heger, P., Wiehe, T., Hering, L., Mayer, G., Misof, B., Niehuis, O. (2016): Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects. BMC Genomics 17, 861. doi:10.1186/s12864-016-3205-1

[weiterlesen] [58]

Astrin, J. J., Höfer, H., Spelda, J., Holstein, J., Bayer, S., Hendrich, L., Huber, B. A., Kielhorn, K. H., Krammer, H. J., Lemke, M., Monje, J. C., Morinière, J., Rulik, B., Petersen, M., Janssen, H., Muster, C. (2016): Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany. - PLoS ONE 11: e0162624.

[weiterlesen] [59]

Links:

PLoS ONE 11(9): e0162624 [Full Text] [60]
German Barcode of Life [61]

2015

Wilbrandt, J., Lee, P., Read, H., Wesener, T. (2015): A first integrative study of the identity and origins of the British Dwarf Pill Millipede populations, Trachysphaera cf. lobata (Diplopoda, Glomerida, Glomeridae). Biodiversity Data Journal 3: e5176.

[weiterlesen] [62]

Links:

PDF [63]

2014

Struck T, Wey-Fabrizius AR, Golombeck A, Hering L, Weigert A, Bleidorn C, Klebow S, Iakovenko N, Hausdorf B, Petersen M, Kück P, Herlyn H, Hankeln T (2014): Platyzoan paraphyly based on phylogenomic data supports a non-coelomate ancestry of Spiralia. Mol. Biol. Evol. 31:1833-1849, doi:10.1093/molbev/msu143

[weiterlesen] [64]

Links:

https://academic.oup.com/mbe/article-lookup/doi/10.1093/molbev/msu143 [65]

Bernhard Misof, Shanlin Liu, Karen Meusemann, Ralph S. Peters, Alexander Donath, Christoph Mayer, Paul B. Frandsen, Jessica Ware, Tomáš Flouri, Rolf G. Beutel, Oliver Niehuis, Malte Petersen, Fernando Izquierdo-Carrasco, Torsten Wappler, Jes Rust, Andre J. Aberer, Ulrike Aspöck, Horst Aspöck, Daniela Bartel, Alexander Blanke, Simon Berger, Alexander Böhm, Thomas R. Buckley, Brett Calcott, Junqing Chen, Frank Friedrich, Makiko Fukui, Mari Fujita, Carola Greve, Peter Grobe, Shengchang Gu, Ying Huang, Lars S. Jermiin, Akito Y. Kawahara, Lars Krogmann, Martin Kubiak, Robert Lanfear, Harald Letsch, Yiyuan Li, Zhenyu Li, Jiguang Li, Haorong Lu, Ryuichiro Machida, Yuta Mashimo, Pashalia Kapli, Duane D. McKenna, Guanliang Meng, Yasutaka Nakagaki, José Luis Navarrete-Heredia, Michael Ott, Yanxiang Ou, Günther Pass, Lars Podsiadlowski, Hans Pohl, Björn M. von Reumont, Kai Schütte, Kaoru Sekiya, Shota Shimizu, Adam Slipinski, Alexandros Stamatakis, Wenhui Song, Xu Su, Nikolaus U. Szucsich, Meihua Tan, Xuemei Tan, Min Tang, Jingbo Tang, Gerald Timelthaler, Shigekazu Tomizuka, Michelle Trautwein, Xiaoli Tong, Toshiki Uchifune, Manfred G. Walzl, Brian M. Wiegmann, Jeanne Wilbrandt, Benjamin Wipfler, Thomas K. F. Wong, Qiong Wu, Gengxiong Wu, Yinlong Xie, Shenzhou Yang, Qing Yang, David K. Yeates, Kazunori Yoshizawa, Qing Zhang, Rui Zhang, Wenwei Zhang, Yunhui Zhang, Jing Zhao, Chengran Zhou, Lili Zhou, Tanja Ziesmann, Shijie Zou, Yingrui Li, Xun Xu, Yong Zhang, Huanming Yang, Jian Wang, Jun Wang, Karl M. Kjer, Xin Zhou (2014): Phylogenomics resolves the timing and pattern of insect evolution. - Science 346 ( 6210): 763-767.

[weiterlesen] [66]

Links:

1KITE - Project @ ZFMK [67]
Abstract [68]
Reprint [69]
Full text [70]